Index

A

active_categories (megadetector.postprocessing.analyze_classification_results.AnalysisResults attribute) add_crop() (megadetector.detection.run_md_and_speciesnet.CropBatch method) add_files_to_single_tar_file() (in module megadetector.utils.path_utils) add_metadata_to_megadetector_model_file() (in module megadetector.detection.pytorch_detector) add_pre_smoothing_description (megadetector.postprocessing.classification_postprocessing.ClassificationSmoothingOptions attribute) add_search_links (megadetector.visualization.visualize_db.DbVizOptions attribute) additional_image_fields_to_display (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) admin1_region (megadetector.detection.run_md_and_speciesnet.RunMDSpeciesNetOptions attribute) allow_existing_directory (megadetector.postprocessing.separate_detections_into_folders.SeparateDetectionsIntoFoldersOptions attribute) allow_missing_files (megadetector.postprocessing.separate_detections_into_folders.SeparateDetectionsIntoFoldersOptions attribute) allow_write_error (megadetector.data_management.read_exif.ReadExifOptions attribute) allowIntIDs (megadetector.data_management.databases.integrity_check_json_db.IntegrityCheckOptions attribute) almost_detection_confidence_threshold (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) alt_model (megadetector.utils.md_tests.MDTestOptions attribute) alternative_batch_size (megadetector.utils.md_tests.MDTestOptions attribute)

AnalysisResults (class in megadetector.postprocessing.analyze_classification_results) analyze_classification_results() (in module megadetector.postprocessing.analyze_classification_results) animl_results_to_md_results() (in module megadetector.data_management.animl_to_md) annotations_to_class_names() (megadetector.data_management.cct_json_utils.CameraTrapJsonUtils static method) annotations_to_string() (megadetector.data_management.cct_json_utils.CameraTrapJsonUtils static method) api_detection_results (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) (megadetector.postprocessing.postprocess_batch_results.PostProcessingResults attribute) api_other_fields (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) (megadetector.postprocessing.postprocess_batch_results.PostProcessingResults attribute) api_output_filename_replacements (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) append_job_id_to_symlink_folder (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute) apply_detection_category_mapping_when_classifications_are_present (megadetector.postprocessing.analyze_classification_results.ClassificationAnalysisOptions attribute) apply_sharpening_filter (megadetector.data_management.ocr_tools.DatetimeExtractionOptions attribute) args_to_object() (in module megadetector.utils.ct_utils) augment (megadetector.detection.process_video.ProcessVideoOptions attribute) (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute)

B

background_crop_fraction_of_rough_crop (megadetector.data_management.ocr_tools.DatetimeExtractionOptions attribute) background_tolerance (megadetector.data_management.ocr_tools.DatetimeExtractionOptions attribute) base_input_folder (megadetector.postprocessing.separate_detections_into_folders.SeparateDetectionsIntoFoldersOptions attribute) base_output_folder (megadetector.postprocessing.separate_detections_into_folders.SeparateDetectionsIntoFoldersOptions attribute) baseDir (megadetector.data_management.databases.integrity_check_json_db.IntegrityCheckOptions attribute) batch_size (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute) BatchComparisonOptions (class in megadetector.postprocessing.compare_batch_results) BatchComparisonResults (class in megadetector.postprocessing.compare_batch_results) bbox (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.DetectionLocation attribute) (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.IndexedDetection attribute) bCheckImageExistence (megadetector.data_management.databases.integrity_check_json_db.IntegrityCheckOptions attribute) bCheckImageSizes (megadetector.data_management.databases.integrity_check_json_db.IntegrityCheckOptions attribute) bFailOnRenderError (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) bFindUnusedImages (megadetector.data_management.databases.integrity_check_json_db.IntegrityCheckOptions attribute) binomial_name_to_taxonomy_info (megadetector.utils.wi_taxonomy_utils.TaxonomyHandler attribute)

blur_detections() (in module megadetector.visualization.visualization_utils) box_expansion (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) (megadetector.postprocessing.separate_detections_into_folders.SeparateDetectionsIntoFoldersOptions attribute) (megadetector.visualization.visualize_db.DbVizOptions attribute) box_thickness (megadetector.visualization.visualize_db.DbVizOptions attribute) boxExpansion (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) bParallelizeComparisons (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) bParallelizeRendering (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) bPrintMissingImageWarnings (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) break_at_image (megadetector.postprocessing.classification_postprocessing.ClassificationSmoothingOptions attribute) bRenderDetectionTiles (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) bRenderOtherDetections (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) bRequireLocation (megadetector.data_management.databases.integrity_check_json_db.IntegrityCheckOptions attribute) bWriteFilteringFolder (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) byte_handling (megadetector.data_management.read_exif.ReadExifOptions attribute)

C

calibration_ece() (in module megadetector.visualization.plot_utils) calibration_matches (megadetector.postprocessing.detector_calibration.CalibrationResults attribute) CalibrationMatchColumns (class in megadetector.postprocessing.detector_calibration) CalibrationOptions (class in megadetector.postprocessing.detector_calibration) CalibrationResults (class in megadetector.postprocessing.detector_calibration) CameraTrapJsonUtils (class in megadetector.data_management.cct_json_utils) camtrap_dp_to_coco() (in module megadetector.data_management.camtrap_dp_to_coco) categories_to_exclude (megadetector.postprocessing.merge_detections.MergeDetectionsOptions attribute) categories_to_ignore (megadetector.postprocessing.analyze_classification_results.ClassificationAnalysisOptions attribute) categories_to_image_pairs (megadetector.postprocessing.compare_batch_results.PairwiseBatchComparisonResults attribute) categories_to_include (megadetector.postprocessing.merge_detections.MergeDetectionsOptions attribute) categories_to_keep (megadetector.postprocessing.subset_json_detector_output.SubsetJsonDetectorOutputOptions attribute) categories_to_plot (megadetector.postprocessing.detector_calibration.CalibrationOptions attribute) categories_to_separate (megadetector.postprocessing.categorize_detections_by_size.SizeCategorizationOptions attribute) categorize_detections_by_size() (in module megadetector.postprocessing.categorize_detections_by_size) category (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.DetectionLocation attribute) (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.IndexedDetection attribute) category_id_to_category_name (megadetector.postprocessing.separate_detections_into_folders.SeparateDetectionsIntoFoldersOptions attribute) category_id_to_name (megadetector.postprocessing.detector_calibration.CalibrationOptions attribute) category_name_to_folder (megadetector.postprocessing.separate_detections_into_folders.SeparateDetectionsIntoFoldersOptions attribute) category_name_to_sort_weight (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) category_name_to_threshold (megadetector.postprocessing.separate_detections_into_folders.SeparateDetectionsIntoFoldersOptions attribute) category_names_to_blur (megadetector.postprocessing.separate_detections_into_folders.SeparateDetectionsIntoFoldersOptions attribute) category_names_to_include (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) (megadetector.postprocessing.create_crop_folder.CreateCropFolderOptions attribute) category_names_to_keep (megadetector.postprocessing.subset_json_detector_output.SubsetJsonDetectorOutputOptions attribute) categoryAgnosticComparisons (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) cct_to_md() (in module megadetector.data_management.cct_to_md) check_image_existence (megadetector.postprocessing.validate_batch_results.ValidateBatchResultsOptions attribute) check_image_integrity() (in module megadetector.visualization.visualization_utils) checkpoint_frequency (megadetector.detection.process_video.ProcessVideoOptions attribute) (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute) checkpoint_path (megadetector.detection.process_video.ProcessVideoOptions attribute) class_agnostic_comparison (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) classes_to_exclude (megadetector.visualization.visualize_db.DbVizOptions attribute) classes_to_include (megadetector.visualization.visualize_db.DbVizOptions attribute) classification_categories (megadetector.postprocessing.separate_detections_into_folders.SeparateDetectionsIntoFoldersOptions attribute) classification_category_id_to_name (megadetector.postprocessing.separate_detections_into_folders.SeparateDetectionsIntoFoldersOptions attribute) classification_confidence_threshold (megadetector.postprocessing.analyze_classification_results.ClassificationAnalysisOptions attribute) (megadetector.postprocessing.classification_postprocessing.ClassificationSmoothingOptions attribute) (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) (megadetector.visualization.visualize_video_output.VideoVisualizationOptions attribute) classification_confidence_threshold_a (megadetector.postprocessing.compare_batch_results.PairwiseBatchComparisonOptions attribute) classification_confidence_threshold_b (megadetector.postprocessing.compare_batch_results.PairwiseBatchComparisonOptions attribute) classification_model (megadetector.detection.run_md_and_speciesnet.RunMDSpeciesNetOptions attribute) classification_thresholds (megadetector.postprocessing.separate_detections_into_folders.SeparateDetectionsIntoFoldersOptions attribute) ClassificationAnalysisOptions (class in megadetector.postprocessing.analyze_classification_results) ClassificationSmoothingOptions (class in megadetector.postprocessing.classification_postprocessing) classifier_batch_size (megadetector.detection.run_md_and_speciesnet.RunMDSpeciesNetOptions attribute) clean_filename() (in module megadetector.utils.path_utils) clean_path() (in module megadetector.utils.path_utils) clean_taxonomy_string() (in module megadetector.utils.wi_taxonomy_utils) cli_test_pythonpath (megadetector.utils.md_tests.MDTestOptions attribute) cli_working_dir (megadetector.utils.md_tests.MDTestOptions attribute) clusterLabel (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.DetectionLocation attribute) coco_to_labelme() (in module megadetector.data_management.coco_to_labelme) coco_to_yolo() (in module megadetector.data_management.coco_to_yolo) colormap (megadetector.visualization.visualize_db.DbVizOptions attribute) colormap_a (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) colormap_b (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute)

COLUMN_CATEGORY_ID (megadetector.postprocessing.detector_calibration.CalibrationMatchColumns attribute) COLUMN_CONF_A (megadetector.postprocessing.detector_calibration.CalibrationMatchColumns attribute) COLUMN_CONF_B (megadetector.postprocessing.detector_calibration.CalibrationMatchColumns attribute) COLUMN_I_IMAGE (megadetector.postprocessing.detector_calibration.CalibrationMatchColumns attribute) COLUMN_IOU (megadetector.postprocessing.detector_calibration.CalibrationMatchColumns attribute) COLUMN_MATCHES_GT (megadetector.postprocessing.detector_calibration.CalibrationMatchColumns attribute) combine_batch_output_dictionaries() (in module megadetector.postprocessing.combine_batch_outputs) combine_batch_output_files() (in module megadetector.postprocessing.combine_batch_outputs) combine_cct_dictionaries() (in module megadetector.data_management.databases.combine_coco_camera_traps_files) combine_cct_files() (in module megadetector.data_management.databases.combine_coco_camera_traps_files) combine_redundant_classification_categories() (in module megadetector.postprocessing.classification_postprocessing) common_name_to_taxonomy_info (megadetector.utils.wi_taxonomy_utils.TaxonomyHandler attribute) compare_batch_results() (in module megadetector.postprocessing.compare_batch_results) compare_detection_lists() (in module megadetector.utils.md_tests) compare_model_confidence_values() (in module megadetector.postprocessing.detector_calibration) compare_results() (in module megadetector.utils.md_tests) compare_values_nan_equal() (in module megadetector.utils.ct_utils) comparison_friendly_name (megadetector.postprocessing.compare_batch_results.PairwiseBatchComparisonResults attribute) comparison_short_name (megadetector.postprocessing.compare_batch_results.PairwiseBatchComparisonResults attribute) compatibility_mode (megadetector.detection.pytorch_detector.PTDetector attribute) compute_file_hash() (in module megadetector.utils.path_utils) conf_thres (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute) confidence (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.IndexedDetection attribute) confidence_field_name (megadetector.visualization.visualize_db.DbVizOptions attribute) confidence_threshold (megadetector.postprocessing.create_crop_folder.CreateCropFolderOptions attribute) (megadetector.postprocessing.detector_calibration.CalibrationOptions attribute) (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) (megadetector.postprocessing.subset_json_detector_output.SubsetJsonDetectorOutputOptions attribute) (megadetector.visualization.visualize_db.DbVizOptions attribute) (megadetector.visualization.visualize_video_output.VideoVisualizationOptions attribute) confidenceMax (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) confidenceMin (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) confusion_matrix (megadetector.postprocessing.analyze_classification_results.AnalysisResults attribute) convert_csv_to_json() (in module megadetector.postprocessing.convert_output_format) convert_json_to_csv() (in module megadetector.postprocessing.convert_output_format) convert_xywh_to_xyxy() (in module megadetector.utils.ct_utils) convert_yolo_to_xywh() (in module megadetector.utils.ct_utils) copy (megadetector.postprocessing.top_folders_to_bottom.TopFoldersToBottomOptions attribute) copy_jsons_to_folders (megadetector.postprocessing.subset_json_detector_output.SubsetJsonDetectorOutputOptions attribute) copy_jsons_to_folders_directories_must_exist (megadetector.postprocessing.subset_json_detector_output.SubsetJsonDetectorOutputOptions attribute) count_detections_by_classification_category() (in module megadetector.postprocessing.classification_postprocessing) country (megadetector.detection.run_md_and_speciesnet.RunMDSpeciesNetOptions attribute) country_code_to_country (megadetector.utils.wi_taxonomy_utils.TaxonomyHandler attribute) country_to_country_code (megadetector.utils.wi_taxonomy_utils.TaxonomyHandler attribute) cpu_execution_is_error (megadetector.utils.md_tests.MDTestOptions attribute) create_category_pages (megadetector.visualization.visualize_db.DbVizOptions attribute) create_crop_folder() (in module megadetector.postprocessing.create_crop_folder) create_html_index() (in module megadetector.utils.directory_listing) create_sequences() (in module megadetector.data_management.cct_json_utils) CreateCropFolderOptions (class in megadetector.postprocessing.create_crop_folder) crop_image() (in module megadetector.visualization.visualization_utils) crop_image_with_normalized_coordinates() (in module megadetector.visualization.render_images_with_thumbnails) crop_padding (megadetector.data_management.ocr_tools.DatetimeExtractionOptions attribute) crop_results_to_image_results() (in module megadetector.postprocessing.create_crop_folder) crop_to_solid_region() (in module megadetector.data_management.ocr_tools) CropBatch (class in megadetector.detection.run_md_and_speciesnet) CropMetadata (class in megadetector.detection.run_md_and_speciesnet) crops (megadetector.detection.run_md_and_speciesnet.CropBatch attribute) custom_category_mapping (megadetector.visualization.visualize_db.DbVizOptions attribute) customDirNameFunction (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute)

D

data_a (megadetector.postprocessing.detector_calibration.CalibrationResults attribute) data_b (megadetector.postprocessing.detector_calibration.CalibrationResults attribute) datetime_conversion_failure_behavior (megadetector.data_management.cct_json_utils.SequenceOptions attribute) DatetimeExtractionOptions (class in megadetector.data_management.ocr_tools) DbVizOptions (class in megadetector.visualization.visualize_db) debug_max_images (megadetector.postprocessing.separate_detections_into_folders.SeparateDetectionsIntoFoldersOptions attribute) (megadetector.postprocessing.subset_json_detector_output.SubsetJsonDetectorOutputOptions attribute) debugMaxDir (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) debugMaxRenderDetection (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) debugMaxRenderDir (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) debugMaxRenderInstance (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) default_category_is_smallest (megadetector.postprocessing.categorize_detections_by_size.SizeCategorizationOptions attribute) default_model (megadetector.utils.md_tests.MDTestOptions attribute) delete_file() (in module megadetector.utils.path_utils) detection_category_mapping (megadetector.postprocessing.analyze_classification_results.ClassificationAnalysisOptions attribute) detection_category_names_to_smooth (megadetector.postprocessing.classification_postprocessing.ClassificationSmoothingOptions attribute) detection_confidence_threshold (megadetector.postprocessing.classification_postprocessing.ClassificationSmoothingOptions attribute) detection_confidence_threshold_for_classification (megadetector.detection.run_md_and_speciesnet.RunMDSpeciesNetOptions attribute) detection_confidence_threshold_for_output (megadetector.detection.run_md_and_speciesnet.RunMDSpeciesNetOptions attribute) detection_threshold (megadetector.postprocessing.analyze_classification_results.ClassificationAnalysisOptions attribute) detection_thresholds_a (megadetector.postprocessing.compare_batch_results.PairwiseBatchComparisonOptions attribute) detection_thresholds_b (megadetector.postprocessing.compare_batch_results.PairwiseBatchComparisonOptions attribute) DetectionLocation (class in megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core) detectionResults (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionResults attribute)

detectionResultsFiltered (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionResults attribute) detections_file (megadetector.detection.run_md_and_speciesnet.RunMDSpeciesNetOptions attribute) detectionTilesCroppedGridWidth (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) detectionTilesMaxCrops (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) detectionTilesPrimaryImageLocation (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) detectionTilesPrimaryImageWidth (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) detector_batch_size (megadetector.detection.run_md_and_speciesnet.RunMDSpeciesNetOptions attribute) detector_model (megadetector.detection.run_md_and_speciesnet.RunMDSpeciesNetOptions attribute) detector_options (megadetector.detection.process_video.ProcessVideoOptions attribute) (megadetector.utils.md_tests.MDTestOptions attribute) detector_output_file (megadetector.utils.extract_frames_from_video.FrameExtractionOptions attribute) device (megadetector.detection.pytorch_detector.PTDetector attribute) device_string (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute) dict_to_kvp_list() (in module megadetector.utils.ct_utils) dict_to_object() (in module megadetector.utils.ct_utils) directml_test() (in module megadetector.utils.gpu_test) disable_gpu (megadetector.utils.md_tests.MDTestOptions attribute) download_relative_filename() (in module megadetector.utils.url_utils) download_test_data() (in module megadetector.utils.md_tests) download_url() (in module megadetector.utils.url_utils) DownloadProgressBar (class in megadetector.utils.url_utils) draw_bounding_box_on_image() (in module megadetector.visualization.visualization_utils) draw_bounding_boxes_on_file() (in module megadetector.visualization.visualization_utils) draw_bounding_boxes_on_image() (in module megadetector.visualization.visualization_utils) draw_db_boxes_on_file() (in module megadetector.visualization.visualization_utils)

E

environment_is_wsl() (in module megadetector.utils.ct_utils) episode_interval_seconds (megadetector.data_management.cct_json_utils.SequenceOptions attribute) error_on_non_matching_lists (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) estimate_md_images_per_second() (in module megadetector.detection.run_detector) exclude_category_name_strings (megadetector.visualization.visualize_video_output.VideoVisualizationOptions attribute) exclude_category_names (megadetector.visualization.visualize_video_output.VideoVisualizationOptions attribute) excludeClasses (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) excludeFolders (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) execute() (in module megadetector.utils.md_tests) (in module megadetector.utils.process_utils) execute_and_print() (in module megadetector.utils.md_tests) (in module megadetector.utils.process_utils)

exif_datetime_tag (megadetector.data_management.read_exif.ExifResultsToCCTOptions attribute) exif_preserving_save() (in module megadetector.visualization.visualization_utils) exif_results_to_cct() (in module megadetector.data_management.read_exif) ExifResultsToCCTOptions (class in megadetector.data_management.read_exif) exiftool_command_name (megadetector.data_management.read_exif.ReadExifOptions attribute) exit_on_empty_video (megadetector.detection.process_video.ProcessVideoOptions attribute) expansion (megadetector.postprocessing.create_crop_folder.CreateCropFolderOptions attribute) export_geofence_data_to_csv() (megadetector.utils.wi_taxonomy_utils.TaxonomyHandler method) extra_annotation_fields_to_print (megadetector.visualization.visualize_db.DbVizOptions attribute) extra_image_fields_to_print (megadetector.visualization.visualize_db.DbVizOptions attribute) extract_frames() (in module megadetector.utils.extract_frames_from_video) extract_patch_from_image() (in module megadetector.detection.run_tiled_inference)

F

file_list() (in module megadetector.utils.path_utils) filename (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.IndexedDetection attribute) filename_to_location_function (megadetector.data_management.read_exif.ExifResultsToCCTOptions attribute) filename_to_row (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionResults attribute) filenameReplacements (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) filenames_to_include (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) fileparts() (in module megadetector.utils.path_utils) filteredFileListToLoad (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) filterFile (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionResults attribute) filterFileToLoad (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) find_empty_labelme_files() (in module megadetector.data_management.labelme_to_coco) find_equivalent_threshold() (in module megadetector.postprocessing.compare_batch_results) find_geofence_adjustments() (in module megadetector.utils.wi_taxonomy_utils) find_image_level_detections_above_threshold() (in module megadetector.postprocessing.compare_batch_results) find_image_strings() (in module megadetector.utils.path_utils) find_images() (in module megadetector.utils.path_utils) find_images_in_identify_tab() (in module megadetector.utils.wi_platform_utils) find_repeat_detections() (in module megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core) find_text_in_crops() (in module megadetector.data_management.ocr_tools) find_video_strings() (in module megadetector.detection.video_utils)

find_videos() (in module megadetector.detection.video_utils) flatten_output (megadetector.visualization.visualize_video_output.VideoVisualizationOptions attribute) flatten_path() (in module megadetector.utils.path_utils) fn_to_display_fn (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) folder_list() (in module megadetector.utils.path_utils) folder_summary() (in module megadetector.utils.path_utils) force_all_ocr_options (megadetector.data_management.ocr_tools.DatetimeExtractionOptions attribute) force_data_download (megadetector.utils.md_tests.MDTestOptions attribute) force_data_unzip (megadetector.utils.md_tests.MDTestOptions attribute) force_rendering (megadetector.visualization.visualize_db.DbVizOptions attribute) format_datetime_as_exif_datetime_string() (in module megadetector.data_management.read_exif) fourcc (megadetector.visualization.visualize_video_output.VideoVisualizationOptions attribute) frame_rates_are_required (megadetector.detection.video_utils.FrameToVideoOptions attribute) frame_results_to_video_results() (in module megadetector.detection.video_utils) frame_sample (megadetector.detection.process_video.ProcessVideoOptions attribute) (megadetector.detection.run_md_and_speciesnet.RunMDSpeciesNetOptions attribute) (megadetector.utils.extract_frames_from_video.FrameExtractionOptions attribute) FrameExtractionOptions (class in megadetector.utils.extract_frames_from_video) frames_to_video() (in module megadetector.detection.video_utils) FrameToVideoOptions (class in megadetector.detection.video_utils)

G

generate_blank_prediction_payload() (in module megadetector.utils.wi_platform_utils) generate_crops_from_cct() (in module megadetector.data_management.generate_crops_from_cct) generate_csv_report() (in module megadetector.postprocessing.generate_csv_report) generate_csv_rows_for_species() (megadetector.utils.wi_taxonomy_utils.TaxonomyHandler method) generate_csv_rows_to_block_all_countries_except() (megadetector.utils.wi_taxonomy_utils.TaxonomyHandler method) generate_detections_one_batch() (megadetector.detection.pytorch_detector.PTDetector method) generate_detections_one_image() (megadetector.detection.pytorch_detector.PTDetector method) (megadetector.detection.tf_detector.TFDetector method) generate_geofence_adjustment_html_summary() (in module megadetector.utils.wi_taxonomy_utils) generate_instances_json_from_folder() (in module megadetector.utils.wi_taxonomy_utils) generate_md_results_from_predictions_json() (in module megadetector.utils.wi_taxonomy_utils) generate_no_cv_result_payload() (in module megadetector.utils.wi_platform_utils) generate_payload_for_prediction_string() (in module megadetector.utils.wi_platform_utils) generate_payload_with_replacement_detections() (in module megadetector.utils.wi_platform_utils) generate_predictions_json_from_md_results() (in module megadetector.utils.wi_taxonomy_utils) generate_whole_image_detections_for_classifications() (in module megadetector.utils.wi_taxonomy_utils) get_annotations_for_image() (megadetector.data_management.cct_json_utils.IndexedJsonDb method) get_classes_for_image() (megadetector.data_management.cct_json_utils.IndexedJsonDb method) get_classification_description_string() (in module megadetector.postprocessing.classification_postprocessing) get_common_name_from_prediction_string() (in module megadetector.utils.wi_taxonomy_utils) get_datetime_from_image() (in module megadetector.data_management.ocr_tools) get_datetimes_for_folder() (in module megadetector.data_management.ocr_tools) get_detector_metadata_from_version_string() (in module megadetector.detection.run_detector) get_detector_version_from_filename() (in module megadetector.detection.run_detector) get_detector_version_from_model_file() (in module megadetector.detection.run_detector) get_entries_for_locations() (megadetector.data_management.cct_json_utils.CameraTrapJsonUtils static method) get_exif_lat_lon() (in module megadetector.data_management.read_exif)

get_expected_results_filename() (in module megadetector.utils.md_tests) get_file_sizes() (in module megadetector.utils.path_utils) get_gps_info() (in module megadetector.data_management.read_exif) get_image_datetime() (in module megadetector.detection.run_detector_batch) get_image_size() (in module megadetector.visualization.visualization_utils) get_image_sizes() (in module megadetector.data_management.get_image_sizes) get_iou() (in module megadetector.utils.ct_utils) get_kingdom() (in module megadetector.utils.wi_taxonomy_utils) get_labelme_dict_for_image() (in module megadetector.postprocessing.md_to_labelme) get_labelme_dict_for_image_from_coco_record() (in module megadetector.data_management.coco_to_labelme) get_max_conf() (in module megadetector.utils.ct_utils) get_patch_boundaries() (in module megadetector.detection.run_tiled_inference) get_stats_for_category() (in module megadetector.detection.run_inference_with_yolov5_val) get_text_size() (in module megadetector.visualization.visualization_utils) get_typical_confidence_threshold_from_results() (in module megadetector.detection.run_detector) get_url_size() (in module megadetector.utils.url_utils) get_url_sizes() (in module megadetector.utils.url_utils) get_video_fs() (in module megadetector.detection.video_utils) gray_scale_fraction() (in module megadetector.visualization.visualization_utils) ground_truth_file (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) ground_truth_filename_replacements (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) ground_truth_json_file (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) group_annotations_by_image_field() (megadetector.data_management.cct_json_utils.CameraTrapJsonUtils static method) gt_category_name_mappings (megadetector.postprocessing.analyze_classification_results.ClassificationAnalysisOptions attribute) gt_empty_categories (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) gt_file (megadetector.postprocessing.analyze_classification_results.ClassificationAnalysisOptions attribute) gt_iou_threshold (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute)

H

half_precision (megadetector.detection.pytorch_detector.PTDetector attribute) half_precision_enabled (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute) has_gps_info() (in module megadetector.data_management.read_exif) html_content (megadetector.postprocessing.compare_batch_results.PairwiseBatchComparisonResults attribute) html_options (megadetector.visualization.visualize_db.DbVizOptions attribute)

html_output_dir (megadetector.postprocessing.analyze_classification_results.ClassificationAnalysisOptions attribute) html_output_file (megadetector.postprocessing.analyze_classification_results.AnalysisResults attribute) (megadetector.postprocessing.compare_batch_results.BatchComparisonResults attribute) html_sort_order (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) human_readable_to_bytes() (in module megadetector.utils.string_utils)

I

i_detection (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.IndexedDetection attribute) id (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.DetectionLocation attribute) image_base_dir (megadetector.postprocessing.analyze_classification_results.ClassificationAnalysisOptions attribute) (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) image_crop_fraction (megadetector.data_management.ocr_tools.DatetimeExtractionOptions attribute) image_file_to_camera_folder() (in module megadetector.utils.ct_utils) image_filename_list (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute) image_folder (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) image_size (megadetector.detection.process_video.ProcessVideoOptions attribute) (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute) imageBase (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) iMaxNumImages (megadetector.data_management.databases.integrity_check_json_db.IntegrityCheckOptions attribute) in_place_nms() (in module megadetector.detection.run_tiled_inference) include_all_processed_frames (megadetector.detection.video_utils.FrameToVideoOptions attribute) include_almost_detections (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) include_category_descriptions_with_global_counts (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) include_category_names (megadetector.visualization.visualize_video_output.VideoVisualizationOptions attribute) include_category_names_in_filenames (megadetector.visualization.visualize_video_output.VideoVisualizationOptions attribute) include_classification_category_report (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) include_clean_categories (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) include_filename_links (megadetector.visualization.visualize_db.DbVizOptions attribute) include_image_links (megadetector.visualization.visualize_db.DbVizOptions attribute) include_raw_classifications (megadetector.detection.run_md_and_speciesnet.RunMDSpeciesNetOptions attribute) include_size_range (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) include_toc (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) includeFolders (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) IndexedDetection (class in megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core) IndexedJsonDb (class in megadetector.data_management.cct_json_utils) input_folder (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute) (megadetector.postprocessing.top_folders_to_bottom.TopFoldersToBottomOptions attribute) input_video_file (megadetector.detection.process_video.ProcessVideoOptions attribute)

insert_before_extension() (in module megadetector.utils.path_utils) instances (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.DetectionLocation attribute) integrity_check_json_db() (in module megadetector.data_management.databases.integrity_check_json_db) IntegrityCheckOptions (class in megadetector.data_management.databases.integrity_check_json_db) intermediate_file_folder (megadetector.detection.run_md_and_speciesnet.RunMDSpeciesNetOptions attribute) invert_dictionary() (in module megadetector.utils.ct_utils) iou_threshold (megadetector.postprocessing.detector_calibration.CalibrationOptions attribute) (megadetector.postprocessing.merge_detections.MergeDetectionsOptions attribute) iou_threshold_for_file_comparison (megadetector.utils.md_tests.MDTestOptions attribute) iouThreshold (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) is_animal_classification() (in module megadetector.utils.wi_taxonomy_utils) is_empty() (in module megadetector.utils.ct_utils) is_executable() (in module megadetector.utils.path_utils) is_float() (in module megadetector.utils.string_utils) is_function_name() (in module megadetector.utils.ct_utils) is_gpu_available() (in module megadetector.detection.run_detector) (in module megadetector.utils.md_tests) is_human_classification() (in module megadetector.utils.wi_taxonomy_utils) is_image_file() (in module megadetector.utils.path_utils) is_int() (in module megadetector.utils.string_utils) is_iterable() (in module megadetector.utils.ct_utils) is_list_sorted() (in module megadetector.utils.ct_utils) is_running() (megadetector.utils.url_utils.SingletonHTTPServer class method) is_running_in_gha() (in module megadetector.utils.ct_utils) is_sphinx_build() (in module megadetector.utils.ct_utils) is_taxonomic_prediction_string() (in module megadetector.utils.wi_taxonomy_utils) is_valid_prediction_string() (in module megadetector.utils.wi_taxonomy_utils) is_valid_taxonomy_string() (in module megadetector.utils.wi_taxonomy_utils) is_vehicle_classification() (in module megadetector.utils.wi_taxonomy_utils) is_video_file() (in module megadetector.detection.video_utils) isnan() (in module megadetector.utils.ct_utils)

J

job_name (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) job_name_string (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute)

json_confidence_threshold (megadetector.detection.process_video.ProcessVideoOptions attribute) json_serialize_datetime() (in module megadetector.utils.ct_utils)

K

keep_files_in_list (megadetector.postprocessing.subset_json_detector_output.SubsetJsonDetectorOutputOptions attribute)

keep_intermediate_files (megadetector.detection.run_md_and_speciesnet.RunMDSpeciesNetOptions attribute)

L

labelme_file_to_yolo_file() (in module megadetector.data_management.labelme_to_yolo) labelme_folder_to_yolo() (in module megadetector.data_management.labelme_to_yolo) labelme_to_coco() (in module megadetector.data_management.labelme_to_coco) letterbox_stride (megadetector.detection.pytorch_detector.PTDetector attribute) line_thickness (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) (megadetector.postprocessing.separate_detections_into_folders.SeparateDetectionsIntoFoldersOptions attribute) lineThickness (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) link_images_to_originals (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute)

load_and_run_detector() (in module megadetector.detection.run_detector) load_and_run_detector_batch() (in module megadetector.detection.run_detector_batch) load_checkpoint() (in module megadetector.detection.run_detector_batch) load_detector() (in module megadetector.detection.run_detector) load_image() (in module megadetector.visualization.visualization_utils) load_md_or_speciesnet_file() (in module megadetector.utils.wi_taxonomy_utils) load_yolo_class_list() (in module megadetector.data_management.yolo_to_coco) loader_workers (megadetector.detection.run_md_and_speciesnet.RunMDSpeciesNetOptions attribute) log_message() (megadetector.utils.url_utils.QuietHTTPRequestHandler method)

M

main() (in module megadetector.data_management.cct_to_wi) (in module megadetector.data_management.databases.subset_json_db) (in module megadetector.data_management.generate_crops_from_cct) (in module megadetector.data_management.rename_images) make_executable() (in module megadetector.utils.path_utils) make_folder_relative (megadetector.postprocessing.subset_json_detector_output.SubsetJsonDetectorOutputOptions attribute) make_rough_crops() (in module megadetector.data_management.ocr_tools) make_temp_folder() (in module megadetector.utils.ct_utils) make_test_folder() (in module megadetector.utils.ct_utils) mark_copied_detections (megadetector.postprocessing.merge_detections.MergeDetectionsOptions attribute) max_classifications_per_detection (megadetector.postprocessing.analyze_classification_results.ClassificationAnalysisOptions attribute) max_conf_error (megadetector.utils.md_tests.MDTestOptions attribute) max_coord_error (megadetector.utils.md_tests.MDTestOptions attribute) max_detection_size (megadetector.postprocessing.merge_detections.MergeDetectionsOptions attribute) max_detections_nondominant_class (megadetector.postprocessing.classification_postprocessing.ClassificationSmoothingOptions attribute) max_detections_nondominant_class_same_family (megadetector.postprocessing.classification_postprocessing.ClassificationSmoothingOptions attribute) max_figures_per_html_file (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) max_images_per_category (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) max_images_per_cell (megadetector.postprocessing.analyze_classification_results.ClassificationAnalysisOptions attribute) max_images_per_html_file (megadetector.postprocessing.analyze_classification_results.ClassificationAnalysisOptions attribute) max_images_per_page (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) max_none() (in module megadetector.utils.ct_utils) max_samples_per_category (megadetector.postprocessing.detector_calibration.CalibrationOptions attribute) max_sequence_length (megadetector.visualization.visualize_db.DbVizOptions attribute) max_total_images (megadetector.postprocessing.analyze_classification_results.ClassificationAnalysisOptions attribute) max_width (megadetector.utils.extract_frames_from_video.FrameExtractionOptions attribute) maxImagesPerFolder (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) maximum_detection_size (megadetector.postprocessing.subset_json_detector_output.SubsetJsonDetectorOutputOptions attribute) maxOutputImageWidth (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) maxSuspiciousDetectionSize (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) md_results_file (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) md_to_coco() (in module megadetector.postprocessing.md_to_coco) md_to_labelme() (in module megadetector.postprocessing.md_to_labelme) MDTestOptions (class in megadetector.utils.md_tests) measurement (megadetector.postprocessing.categorize_detections_by_size.SizeCategorizationOptions attribute) megadetector.data_management.animl_to_md module megadetector.data_management.camtrap_dp_to_coco module megadetector.data_management.cct_json_utils module megadetector.data_management.cct_to_md module megadetector.data_management.cct_to_wi module megadetector.data_management.coco_to_labelme module megadetector.data_management.coco_to_yolo module megadetector.data_management.databases.combine_coco_camera_traps_files module megadetector.data_management.databases.integrity_check_json_db module megadetector.data_management.databases.subset_json_db module megadetector.data_management.generate_crops_from_cct module megadetector.data_management.get_image_sizes module megadetector.data_management.labelme_to_coco module megadetector.data_management.labelme_to_yolo module megadetector.data_management.lila.lila_common module megadetector.data_management.mewc_to_md module megadetector.data_management.ocr_tools module megadetector.data_management.read_exif module megadetector.data_management.remap_coco_categories module megadetector.data_management.remove_exif module megadetector.data_management.rename_images module megadetector.data_management.resize_coco_dataset module megadetector.data_management.speciesnet_to_md module megadetector.data_management.threshold_coco_dataset module megadetector.data_management.wi_download_csv_to_coco module megadetector.data_management.yolo_output_to_md_output module megadetector.data_management.yolo_to_coco module megadetector.data_management.zamba_to_md module megadetector.detection.process_video module megadetector.detection.pytorch_detector module megadetector.detection.run_detector module megadetector.detection.run_detector_batch module megadetector.detection.run_inference_with_yolov5_val module megadetector.detection.run_md_and_speciesnet module megadetector.detection.run_tiled_inference module megadetector.detection.tf_detector module megadetector.detection.video_utils module megadetector.postprocessing.analyze_classification_results module megadetector.postprocessing.categorize_detections_by_size module megadetector.postprocessing.classification_postprocessing module megadetector.postprocessing.combine_batch_outputs module megadetector.postprocessing.compare_batch_results module megadetector.postprocessing.convert_output_format module megadetector.postprocessing.create_crop_folder module megadetector.postprocessing.detector_calibration module megadetector.postprocessing.generate_csv_report module megadetector.postprocessing.md_to_coco module megadetector.postprocessing.md_to_labelme module megadetector.postprocessing.md_to_wi module megadetector.postprocessing.merge_detections module megadetector.postprocessing.postprocess_batch_results module megadetector.postprocessing.remap_detection_categories module megadetector.postprocessing.render_detection_confusion_matrix module megadetector.postprocessing.repeat_detection_elimination.find_repeat_detections module megadetector.postprocessing.repeat_detection_elimination.remove_repeat_detections module megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core module megadetector.postprocessing.separate_detections_into_folders module megadetector.postprocessing.subset_json_detector_output module

megadetector.postprocessing.top_folders_to_bottom module megadetector.postprocessing.validate_batch_results module megadetector.utils.ct_utils module megadetector.utils.directory_listing module megadetector.utils.extract_frames_from_video module megadetector.utils.gpu_test module megadetector.utils.md_tests module megadetector.utils.path_utils module megadetector.utils.process_utils module megadetector.utils.split_locations_into_train_val module megadetector.utils.string_utils module megadetector.utils.url_utils module megadetector.utils.wi_platform_utils module megadetector.utils.wi_taxonomy_utils module megadetector.utils.write_html_image_list module megadetector.visualization.plot_utils module megadetector.visualization.render_images_with_thumbnails module megadetector.visualization.visualization_utils module megadetector.visualization.visualize_db module megadetector.visualization.visualize_detector_output module megadetector.visualization.visualize_video_output module merge_classification_categories() (in module megadetector.postprocessing.classification_postprocessing) merge_detections() (in module megadetector.postprocessing.merge_detections) merge_empty_only (megadetector.postprocessing.merge_detections.MergeDetectionsOptions attribute) merge_prediction_json_files() (in module megadetector.utils.wi_taxonomy_utils) MergeDetectionsOptions (class in megadetector.postprocessing.merge_detections) metadata (megadetector.detection.run_md_and_speciesnet.CropBatch attribute) mewc_to_md() (in module megadetector.data_management.mewc_to_md) min_background_fraction (megadetector.data_management.ocr_tools.DatetimeExtractionOptions attribute) min_background_fraction_for_background_row (megadetector.data_management.ocr_tools.DatetimeExtractionOptions attribute) min_detection_size (megadetector.postprocessing.merge_detections.MergeDetectionsOptions attribute) min_detections_to_overwrite_other (megadetector.postprocessing.classification_postprocessing.ClassificationSmoothingOptions attribute) min_detections_to_overwrite_secondary (megadetector.postprocessing.classification_postprocessing.ClassificationSmoothingOptions attribute) min_detections_to_overwrite_secondary_same_family (megadetector.postprocessing.classification_postprocessing.ClassificationSmoothingOptions attribute) min_none() (in module megadetector.utils.ct_utils) min_output_length_seconds (megadetector.visualization.visualize_video_output.VideoVisualizationOptions attribute) min_text_length (megadetector.data_management.ocr_tools.DatetimeExtractionOptions attribute) min_valid_timestamp_year (megadetector.data_management.read_exif.ExifResultsToCCTOptions attribute) minimum_detection_size (megadetector.postprocessing.subset_json_detector_output.SubsetJsonDetectorOutputOptions attribute) minSuspiciousDetectionSize (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) missingImageWarningType (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) model_file (megadetector.detection.process_video.ProcessVideoOptions attribute) model_filename (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute) model_folder (megadetector.utils.md_tests.MDTestOptions attribute) model_name_a (megadetector.postprocessing.detector_calibration.CalibrationOptions attribute) model_name_b (megadetector.postprocessing.detector_calibration.CalibrationOptions attribute) model_type (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute) model_version_string (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) modify_in_place (megadetector.postprocessing.classification_postprocessing.ClassificationSmoothingOptions attribute) module megadetector.data_management.animl_to_md megadetector.data_management.camtrap_dp_to_coco megadetector.data_management.cct_json_utils megadetector.data_management.cct_to_md megadetector.data_management.cct_to_wi megadetector.data_management.coco_to_labelme megadetector.data_management.coco_to_yolo megadetector.data_management.databases.combine_coco_camera_traps_files megadetector.data_management.databases.integrity_check_json_db megadetector.data_management.databases.subset_json_db megadetector.data_management.generate_crops_from_cct megadetector.data_management.get_image_sizes megadetector.data_management.labelme_to_coco megadetector.data_management.labelme_to_yolo megadetector.data_management.lila.lila_common megadetector.data_management.mewc_to_md megadetector.data_management.ocr_tools megadetector.data_management.read_exif megadetector.data_management.remap_coco_categories megadetector.data_management.remove_exif megadetector.data_management.rename_images megadetector.data_management.resize_coco_dataset megadetector.data_management.speciesnet_to_md megadetector.data_management.threshold_coco_dataset megadetector.data_management.wi_download_csv_to_coco megadetector.data_management.yolo_output_to_md_output megadetector.data_management.yolo_to_coco megadetector.data_management.zamba_to_md megadetector.detection.process_video megadetector.detection.pytorch_detector megadetector.detection.run_detector megadetector.detection.run_detector_batch megadetector.detection.run_inference_with_yolov5_val megadetector.detection.run_md_and_speciesnet megadetector.detection.run_tiled_inference megadetector.detection.tf_detector megadetector.detection.video_utils megadetector.postprocessing.analyze_classification_results megadetector.postprocessing.categorize_detections_by_size megadetector.postprocessing.classification_postprocessing megadetector.postprocessing.combine_batch_outputs megadetector.postprocessing.compare_batch_results megadetector.postprocessing.convert_output_format megadetector.postprocessing.create_crop_folder megadetector.postprocessing.detector_calibration megadetector.postprocessing.generate_csv_report megadetector.postprocessing.md_to_coco megadetector.postprocessing.md_to_labelme megadetector.postprocessing.md_to_wi megadetector.postprocessing.merge_detections megadetector.postprocessing.postprocess_batch_results megadetector.postprocessing.remap_detection_categories megadetector.postprocessing.render_detection_confusion_matrix megadetector.postprocessing.repeat_detection_elimination.find_repeat_detections megadetector.postprocessing.repeat_detection_elimination.remove_repeat_detections megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core megadetector.postprocessing.separate_detections_into_folders megadetector.postprocessing.subset_json_detector_output megadetector.postprocessing.top_folders_to_bottom megadetector.postprocessing.validate_batch_results megadetector.utils.ct_utils megadetector.utils.directory_listing megadetector.utils.extract_frames_from_video megadetector.utils.gpu_test megadetector.utils.md_tests megadetector.utils.path_utils megadetector.utils.process_utils megadetector.utils.split_locations_into_train_val megadetector.utils.string_utils megadetector.utils.url_utils megadetector.utils.wi_platform_utils megadetector.utils.wi_taxonomy_utils megadetector.utils.write_html_image_list megadetector.visualization.plot_utils megadetector.visualization.render_images_with_thumbnails megadetector.visualization.visualization_utils megadetector.visualization.visualize_db megadetector.visualization.visualize_detector_output megadetector.visualization.visualize_video_output move_images (megadetector.postprocessing.separate_detections_into_folders.SeparateDetectionsIntoFoldersOptions attribute)

N

n_below_threshold_classifications_to_display (megadetector.postprocessing.analyze_classification_results.ClassificationAnalysisOptions attribute) n_cores_for_multiprocessing_tests (megadetector.utils.md_tests.MDTestOptions attribute) n_mispredictions_for_table (megadetector.postprocessing.analyze_classification_results.ClassificationAnalysisOptions attribute) n_rendering_workers (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) n_threads (megadetector.postprocessing.separate_detections_into_folders.SeparateDetectionsIntoFoldersOptions attribute) (megadetector.postprocessing.top_folders_to_bottom.TopFoldersToBottomOptions attribute) n_way_comparison() (in module megadetector.postprocessing.compare_batch_results) n_workers (megadetector.data_management.read_exif.ReadExifOptions attribute) (megadetector.postprocessing.create_crop_folder.CreateCropFolderOptions attribute) (megadetector.utils.extract_frames_from_video.FrameExtractionOptions attribute)

nDirLevelsFromLeaf (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) negative_classes (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) nms() (in module megadetector.detection.pytorch_detector) non_video_behavior (megadetector.detection.video_utils.FrameToVideoOptions attribute) norollup (megadetector.detection.run_md_and_speciesnet.RunMDSpeciesNetOptions attribute) nth_highest_confidence (megadetector.detection.video_utils.FrameToVideoOptions attribute) nThreads (megadetector.data_management.databases.integrity_check_json_db.IntegrityCheckOptions attribute) num_images_to_sample (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) num_to_visualize (megadetector.visualization.visualize_db.DbVizOptions attribute) nWorkers (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute)

O

occurrenceThreshold (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) offset_yolo_category_ids (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute) open_file() (in module megadetector.utils.path_utils) open_file_in_chrome() (in module megadetector.utils.path_utils) open_image() (in module megadetector.visualization.visualization_utils) open_video() (in module megadetector.detection.video_utils) order_db_keys() (megadetector.data_management.cct_json_utils.CameraTrapJsonUtils static method) other_category_names (megadetector.postprocessing.classification_postprocessing.ClassificationSmoothingOptions attribute) otherDetectionsColors (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) otherDetectionsLineWidth (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) otherDetectionsThreshold (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) otherFields (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionResults attribute) output_dir (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) output_extension (megadetector.visualization.visualize_video_output.VideoVisualizationOptions attribute) output_file (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute) (megadetector.detection.run_md_and_speciesnet.RunMDSpeciesNetOptions attribute)

output_files_are_identical() (in module megadetector.utils.md_tests) output_folder (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) (megadetector.postprocessing.top_folders_to_bottom.TopFoldersToBottomOptions attribute) output_html_encoding (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) output_html_file (megadetector.postprocessing.postprocess_batch_results.PostProcessingResults attribute) output_image_width (megadetector.postprocessing.analyze_classification_results.ClassificationAnalysisOptions attribute) output_json_file (megadetector.detection.process_video.ProcessVideoOptions attribute) outputBase (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) overwrite (megadetector.postprocessing.analyze_classification_results.ClassificationAnalysisOptions attribute) (megadetector.postprocessing.create_crop_folder.CreateCropFolderOptions attribute) (megadetector.postprocessing.merge_detections.MergeDetectionsOptions attribute) (megadetector.postprocessing.separate_detections_into_folders.SeparateDetectionsIntoFoldersOptions attribute) (megadetector.postprocessing.top_folders_to_bottom.TopFoldersToBottomOptions attribute) overwrite_handling (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute) (megadetector.detection.run_md_and_speciesnet.RunMDSpeciesNetOptions attribute) overwrite_json_files (megadetector.postprocessing.subset_json_detector_output.SubsetJsonDetectorOutputOptions attribute)

P

p_crop_success_threshold (megadetector.data_management.ocr_tools.DatetimeExtractionOptions attribute) pairwise_options (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) (megadetector.postprocessing.compare_batch_results.PairwiseBatchComparisonResults attribute) pairwise_results (megadetector.postprocessing.compare_batch_results.BatchComparisonResults attribute) PairwiseBatchComparisonOptions (class in megadetector.postprocessing.compare_batch_results) PairwiseBatchComparisonResults (class in megadetector.postprocessing.compare_batch_results) parallel_check_image_integrity() (in module megadetector.visualization.visualization_utils) parallel_compute_file_hashes() (in module megadetector.utils.path_utils) parallel_copy_files() (in module megadetector.utils.path_utils) parallel_delete_files() (in module megadetector.utils.path_utils) parallel_download_urls() (in module megadetector.utils.url_utils) parallel_get_image_sizes() (in module megadetector.visualization.visualization_utils) parallel_push_results_for_images() (in module megadetector.utils.wi_platform_utils) parallel_unzip_files() (in module megadetector.utils.path_utils) parallel_zip_files() (in module megadetector.utils.path_utils) parallel_zip_folders() (in module megadetector.utils.path_utils) parallelizationUsesThreads (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) parallelize_rendering (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) (megadetector.visualization.visualize_db.DbVizOptions attribute) (megadetector.visualization.visualize_video_output.VideoVisualizationOptions attribute) parallelize_rendering_n_cores (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) (megadetector.visualization.visualize_db.DbVizOptions attribute) (megadetector.visualization.visualize_video_output.VideoVisualizationOptions attribute) parallelize_rendering_with_threads (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) (megadetector.visualization.visualize_db.DbVizOptions attribute) (megadetector.visualization.visualize_video_output.VideoVisualizationOptions attribute) parallelize_with_threads (megadetector.utils.extract_frames_from_video.FrameExtractionOptions attribute) parallelizeWithThreads (megadetector.data_management.databases.integrity_check_json_db.IntegrityCheckOptions attribute) parse_bool_string() (in module megadetector.utils.ct_utils) parse_datetimes_from_cct_dict() (in module megadetector.data_management.cct_json_utils) parse_datetimes_from_cct_image_list() (in module megadetector.data_management.cct_json_utils)

parse_exif_datetime_string() (in module megadetector.data_management.read_exif) parse_kvp() (in module megadetector.utils.ct_utils) parse_kvp_list() (in module megadetector.utils.ct_utils) parse_link_paths (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) pass_detections_to_processes_method (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) patch_info_to_patch_name() (in module megadetector.detection.run_tiled_inference) path_is_abs() (in module megadetector.utils.path_utils) path_join() (in module megadetector.utils.path_utils) path_separator_replacement (megadetector.visualization.visualize_video_output.VideoVisualizationOptions attribute) per_category_results (megadetector.postprocessing.analyze_classification_results.AnalysisResults attribute) plot_calibration_curve() (in module megadetector.visualization.plot_utils) plot_confusion_matrix() (in module megadetector.visualization.plot_utils) plot_matched_confidence_values() (in module megadetector.postprocessing.detector_calibration) plot_precision_recall_curve() (in module megadetector.visualization.plot_utils) plot_stacked_bar_chart() (in module megadetector.visualization.plot_utils) point_dist() (in module megadetector.utils.ct_utils) pool_type (megadetector.postprocessing.create_crop_folder.CreateCropFolderOptions attribute) PostProcessingOptions (class in megadetector.postprocessing.postprocess_batch_results) PostProcessingResults (class in megadetector.postprocessing.postprocess_batch_results) predicted_category_name_mappings (megadetector.postprocessing.analyze_classification_results.ClassificationAnalysisOptions attribute) prepare_data_update_auth_headers() (in module megadetector.utils.wi_platform_utils) preprocess_image() (megadetector.detection.pytorch_detector.PTDetector method) pretty_print_object() (in module megadetector.utils.ct_utils) preview_yolo_command_only (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute) process_batch_results() (in module megadetector.postprocessing.postprocess_batch_results) process_videos() (in module megadetector.detection.process_video) processing_library (megadetector.data_management.read_exif.ReadExifOptions attribute) ProcessVideoOptions (class in megadetector.detection.process_video) propagate_classifications_through_taxonomy (megadetector.postprocessing.classification_postprocessing.ClassificationSmoothingOptions attribute) PTDetector (class in megadetector.detection.pytorch_detector) push_results_for_images() (in module megadetector.utils.wi_platform_utils) python_test_depth (megadetector.utils.md_tests.MDTestOptions attribute)

Q

quality (megadetector.postprocessing.create_crop_folder.CreateCropFolderOptions attribute) (megadetector.utils.extract_frames_from_video.FrameExtractionOptions attribute) (megadetector.visualization.visualize_db.DbVizOptions attribute)

query (megadetector.postprocessing.subset_json_detector_output.SubsetJsonDetectorOutputOptions attribute) QuietHTTPRequestHandler (class in megadetector.utils.url_utils)

R

raise_errors (megadetector.postprocessing.validate_batch_results.ValidateBatchResultsOptions attribute) random_seed (megadetector.postprocessing.analyze_classification_results.ClassificationAnalysisOptions attribute) (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) (megadetector.visualization.visualize_db.DbVizOptions attribute) (megadetector.visualization.visualize_video_output.VideoVisualizationOptions attribute) read_classes_from_yolo_dataset_file() (in module megadetector.data_management.yolo_output_to_md_output) read_exif_from_folder() (in module megadetector.data_management.read_exif) read_exif_tags_for_image() (in module megadetector.data_management.read_exif) read_images_from_download_bundle() (in module megadetector.utils.wi_platform_utils) read_lila_all_images_file() (in module megadetector.data_management.lila.lila_common) read_lila_metadata() (in module megadetector.data_management.lila.lila_common) read_lila_taxonomy_mapping() (in module megadetector.data_management.lila.lila_common) read_list_from_file() (in module megadetector.utils.path_utils) read_metadata_file_for_dataset() (in module megadetector.data_management.lila.lila_common) read_metadata_from_megadetector_model_file() (in module megadetector.detection.pytorch_detector) read_pil_exif() (in module megadetector.data_management.read_exif) read_sequences_from_download_bundle() (in module megadetector.utils.wi_platform_utils) read_wildlife_insights_taxonomy_mapping() (in module megadetector.data_management.lila.lila_common) ReadExifOptions (class in megadetector.data_management.read_exif) record_is_unidentified() (in module megadetector.utils.wi_platform_utils) record_lists_are_identical() (in module megadetector.utils.wi_platform_utils) rect_distance() (in module megadetector.utils.ct_utils) recursive (megadetector.detection.process_video.ProcessVideoOptions attribute) (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute) recursive_file_list() (in module megadetector.utils.path_utils) relative_path_base (megadetector.postprocessing.validate_batch_results.ValidateBatchResultsOptions attribute) relativeDir (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.DetectionLocation attribute) remap_coco_categories() (in module megadetector.data_management.remap_coco_categories) remap_detection_categories() (in module megadetector.postprocessing.remap_detection_categories) remove_ansi_codes() (in module megadetector.utils.string_utils) remove_classification_categories_below_count (megadetector.postprocessing.subset_json_detector_output.SubsetJsonDetectorOutputOptions attribute) remove_classification_categories_below_count() (in module megadetector.postprocessing.subset_json_detector_output) remove_classifications_from_non_animal_detections() (in module megadetector.postprocessing.classification_postprocessing) remove_empty_folders (megadetector.postprocessing.separate_detections_into_folders.SeparateDetectionsIntoFoldersOptions attribute) remove_empty_folders() (in module megadetector.utils.path_utils) remove_exif() (in module megadetector.data_management.remove_exif) remove_exif_from_image() (in module megadetector.data_management.remove_exif) remove_failed_images (megadetector.postprocessing.subset_json_detector_output.SubsetJsonDetectorOutputOptions attribute) remove_failed_images() (in module megadetector.postprocessing.subset_json_detector_output) remove_repeat_detections() (in module megadetector.postprocessing.repeat_detection_elimination.remove_repeat_detections) remove_symlink_folder (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute) remove_yolo_results_folder (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute) rename_images() (in module megadetector.data_management.rename_images) render_boxes (megadetector.postprocessing.separate_detections_into_folders.SeparateDetectionsIntoFoldersOptions attribute) render_db_bounding_boxes() (in module megadetector.visualization.visualization_utils)

render_detection_bounding_boxes() (in module megadetector.visualization.visualization_utils) render_detection_confusion_matrix() (in module megadetector.postprocessing.render_detection_confusion_matrix) render_images_with_thumbnails() (in module megadetector.visualization.render_images_with_thumbnails) render_misprediction_pages() (in module megadetector.postprocessing.analyze_classification_results) rendering_bypass_sets (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) rendering_confidence_threshold_a (megadetector.postprocessing.compare_batch_results.PairwiseBatchComparisonOptions attribute) rendering_confidence_threshold_b (megadetector.postprocessing.compare_batch_results.PairwiseBatchComparisonOptions attribute) rendering_fs (megadetector.visualization.visualize_video_output.VideoVisualizationOptions attribute) rendering_pool_type (megadetector.postprocessing.analyze_classification_results.ClassificationAnalysisOptions attribute) rendering_workers (megadetector.postprocessing.analyze_classification_results.ClassificationAnalysisOptions attribute) RepeatDetectionOptions (class in megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core) RepeatDetectionResults (class in megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core) replacement (megadetector.postprocessing.subset_json_detector_output.SubsetJsonDetectorOutputOptions attribute) required_token (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) requireInfo (megadetector.data_management.databases.integrity_check_json_db.IntegrityCheckOptions attribute) resize_coco_dataset() (in module megadetector.data_management.resize_coco_dataset) resize_image() (in module megadetector.visualization.visualization_utils) resize_image_folder() (in module megadetector.visualization.visualization_utils) resize_images() (in module megadetector.visualization.visualization_utils) restrict_to_taxa_list() (in module megadetector.postprocessing.classification_postprocessing) results_description_a (megadetector.postprocessing.compare_batch_results.PairwiseBatchComparisonOptions attribute) results_description_b (megadetector.postprocessing.compare_batch_results.PairwiseBatchComparisonOptions attribute) results_file (megadetector.postprocessing.analyze_classification_results.ClassificationAnalysisOptions attribute) (megadetector.postprocessing.separate_detections_into_folders.SeparateDetectionsIntoFoldersOptions attribute) results_filename_a (megadetector.postprocessing.compare_batch_results.PairwiseBatchComparisonOptions attribute) results_filename_b (megadetector.postprocessing.compare_batch_results.PairwiseBatchComparisonOptions attribute) resume_from_checkpoint (megadetector.detection.process_video.ProcessVideoOptions attribute) return_data (megadetector.postprocessing.detector_calibration.CalibrationOptions attribute) (megadetector.postprocessing.validate_batch_results.ValidateBatchResultsOptions attribute) return_images_by_category (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) rollup_target_confidence (megadetector.detection.run_md_and_speciesnet.RunMDSpeciesNetOptions attribute) round_float() (in module megadetector.utils.ct_utils) round_float_array() (in module megadetector.utils.ct_utils) round_floats_in_nested_dict() (in module megadetector.utils.ct_utils) rows_by_directory (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionResults attribute) run_all_module_tests() (in module megadetector.utils.ct_utils) run_callback_on_frames() (in module megadetector.detection.video_utils) run_callback_on_frames_for_folder() (in module megadetector.detection.video_utils) run_cli_tests() (in module megadetector.utils.md_tests) run_download_tests() (in module megadetector.utils.md_tests) run_inference_with_yolo_val() (in module megadetector.detection.run_inference_with_yolov5_val) run_md_and_speciesnet() (in module megadetector.detection.run_md_and_speciesnet) run_python_tests() (in module megadetector.utils.md_tests) run_tests() (in module megadetector.utils.md_tests) run_tiled_inference() (in module megadetector.detection.run_tiled_inference) RunMDSpeciesNetOptions (class in megadetector.detection.run_md_and_speciesnet)

S

safe_create_link() (in module megadetector.utils.path_utils) sample (megadetector.visualization.visualize_video_output.VideoVisualizationOptions attribute) sample_seed (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) sampleImageDetections (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.DetectionLocation attribute) sampleImageRelativeFileName (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.DetectionLocation attribute) save_yolo_debug_output (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute) scratch_dir (megadetector.utils.md_tests.MDTestOptions attribute) separate_detections_by_category (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) separate_detections_into_folders() (in module megadetector.postprocessing.separate_detections_into_folders) separate_plots_by_category (megadetector.postprocessing.detector_calibration.CalibrationOptions attribute) separate_plots_by_correctness (megadetector.postprocessing.detector_calibration.CalibrationOptions attribute) SeparateDetectionsIntoFoldersOptions (class in megadetector.postprocessing.separate_detections_into_folders) sequence_level_analysis (megadetector.postprocessing.analyze_classification_results.ClassificationAnalysisOptions attribute) SequenceOptions (class in megadetector.data_management.cct_json_utils) set_up() (megadetector.data_management.resize_coco_dataset.TestResizeCocoDataset method) (megadetector.utils.path_utils.TestPathUtils method) (megadetector.utils.url_utils.TestUrlUtils method) (megadetector.visualization.visualization_utils.TestVisualizationUtils method) sets_overlap() (in module megadetector.utils.ct_utils) show_category_names_on_detected_boxes (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) show_category_names_on_gt_boxes (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) show_classification_categories (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) show_full_paths (megadetector.visualization.visualize_db.DbVizOptions attribute) show_labels_for_image_level_gt (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) single_label_per_image (megadetector.postprocessing.analyze_classification_results.ClassificationAnalysisOptions attribute) single_prediction_per_image (megadetector.postprocessing.analyze_classification_results.ClassificationAnalysisOptions attribute) SingletonHTTPServer (class in megadetector.utils.url_utils) size_category_names (megadetector.postprocessing.categorize_detections_by_size.SizeCategorizationOptions attribute) size_thresholds (megadetector.postprocessing.categorize_detections_by_size.SizeCategorizationOptions attribute) SizeCategorizationOptions (class in megadetector.postprocessing.categorize_detections_by_size) skip_cli_tests (megadetector.utils.md_tests.MDTestOptions attribute) skip_cpu_tests (megadetector.utils.md_tests.MDTestOptions attribute) skip_download_tests (megadetector.utils.md_tests.MDTestOptions attribute) skip_empty_images (megadetector.postprocessing.separate_detections_into_folders.SeparateDetectionsIntoFoldersOptions attribute) skip_image_tests (megadetector.utils.md_tests.MDTestOptions attribute) skip_images (megadetector.detection.run_md_and_speciesnet.RunMDSpeciesNetOptions attribute) skip_import_tests (megadetector.utils.md_tests.MDTestOptions attribute) skip_localhost_downloads (megadetector.utils.md_tests.MDTestOptions attribute)

skip_python_tests (megadetector.utils.md_tests.MDTestOptions attribute) skip_video (megadetector.detection.run_md_and_speciesnet.RunMDSpeciesNetOptions attribute) skip_video_tests (megadetector.utils.md_tests.MDTestOptions attribute) smartSort (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) smartSortDistanceThreshold (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionOptions attribute) smooth_classification_results_image_level() (in module megadetector.postprocessing.classification_postprocessing) smooth_classification_results_sequence_level() (in module megadetector.postprocessing.classification_postprocessing) sort_by_confidence (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) sort_by_filename (megadetector.visualization.visualize_db.DbVizOptions attribute) sort_classification_results_by_count (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) sort_dictionary_by_key() (in module megadetector.utils.ct_utils) sort_dictionary_by_value() (in module megadetector.utils.ct_utils) sort_list_of_dicts_by_key() (in module megadetector.utils.ct_utils) sort_results_for_image() (in module megadetector.utils.ct_utils) source (megadetector.detection.run_md_and_speciesnet.RunMDSpeciesNetOptions attribute) source_confidence_thresholds (megadetector.postprocessing.merge_detections.MergeDetectionsOptions attribute) species_allowed_in_country() (megadetector.utils.wi_taxonomy_utils.TaxonomyHandler method) species_string_to_canonical_species_string() (megadetector.utils.wi_taxonomy_utils.TaxonomyHandler method) species_string_to_taxonomy_info() (megadetector.utils.wi_taxonomy_utils.TaxonomyHandler method) split_folder_mode (megadetector.postprocessing.subset_json_detector_output.SubsetJsonDetectorOutputOptions attribute) split_folder_param (megadetector.postprocessing.subset_json_detector_output.SubsetJsonDetectorOutputOptions attribute) split_folders (megadetector.postprocessing.subset_json_detector_output.SubsetJsonDetectorOutputOptions attribute) split_instances_into_n_batches() (in module megadetector.utils.wi_taxonomy_utils) split_list_into_fixed_size_chunks() (in module megadetector.utils.ct_utils) split_list_into_n_chunks() (in module megadetector.utils.ct_utils) split_locations_into_train_val() (in module megadetector.utils.split_locations_into_train_val) split_path() (in module megadetector.utils.path_utils) start_server() (megadetector.utils.url_utils.SingletonHTTPServer class method) stop_server() (megadetector.utils.url_utils.SingletonHTTPServer class method) subset_json_db() (in module megadetector.data_management.databases.subset_json_db) subset_json_detector_output() (in module megadetector.postprocessing.subset_json_detector_output) subset_json_detector_output_by_categories() (in module megadetector.postprocessing.subset_json_detector_output) subset_json_detector_output_by_confidence() (in module megadetector.postprocessing.subset_json_detector_output) subset_json_detector_output_by_list() (in module megadetector.postprocessing.subset_json_detector_output) subset_json_detector_output_by_query() (in module megadetector.postprocessing.subset_json_detector_output) subset_json_detector_output_by_size() (in module megadetector.postprocessing.subset_json_detector_output) SubsetJsonDetectorOutputOptions (class in megadetector.postprocessing.subset_json_detector_output) suspicious_detections (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.RepeatDetectionResults attribute) symlink_folder (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute)

T

tag_types_to_ignore (megadetector.data_management.read_exif.ReadExifOptions attribute) tags_to_exclude (megadetector.data_management.read_exif.ReadExifOptions attribute) tags_to_include (megadetector.data_management.read_exif.ReadExifOptions attribute) target_confidence_threshold (megadetector.postprocessing.merge_detections.MergeDetectionsOptions attribute) target_recall (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) target_width (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) taxonomy_info_to_taxonomy_string() (in module megadetector.utils.wi_taxonomy_utils) taxonomy_level_index() (in module megadetector.utils.wi_taxonomy_utils) taxonomy_level_string_to_index() (in module megadetector.utils.wi_taxonomy_utils) taxonomy_level_to_string() (in module megadetector.utils.wi_taxonomy_utils) taxonomy_propagation_count_weight (megadetector.postprocessing.classification_postprocessing.ClassificationSmoothingOptions attribute) taxonomy_propagation_level_weight (megadetector.postprocessing.classification_postprocessing.ClassificationSmoothingOptions attribute) taxonomy_string_to_geofencing_rules (megadetector.utils.wi_taxonomy_utils.TaxonomyHandler attribute) taxonomy_string_to_taxonomy_info (megadetector.utils.wi_taxonomy_utils.TaxonomyHandler attribute) TaxonomyHandler (class in megadetector.utils.wi_taxonomy_utils) tear_down() (megadetector.data_management.resize_coco_dataset.TestResizeCocoDataset method) (megadetector.utils.path_utils.TestPathUtils method) (megadetector.utils.url_utils.TestUrlUtils method) (megadetector.visualization.visualization_utils.TestVisualizationUtils method) tesseract_cmd (megadetector.data_management.ocr_tools.DatetimeExtractionOptions attribute) tesseract_config_strings (megadetector.data_management.ocr_tools.DatetimeExtractionOptions attribute) test_add_files_to_single_tar_file() (megadetector.utils.path_utils.TestPathUtils method) test_bounding_box_operations() (in module megadetector.utils.ct_utils) test_check_image_integrity() (megadetector.visualization.visualization_utils.TestVisualizationUtils method) test_compute_file_hash() (megadetector.utils.path_utils.TestPathUtils method) test_data_url (megadetector.utils.md_tests.MDTestOptions attribute) test_datetime_serialization() (in module megadetector.utils.ct_utils) test_detection_processing() (in module megadetector.utils.ct_utils) test_dictionary_operations() (in module megadetector.utils.ct_utils) test_download_relative_filename() (megadetector.utils.url_utils.TestUrlUtils method) test_download_url_escape_spaces() (megadetector.utils.url_utils.TestUrlUtils method) test_download_url_force_download() (megadetector.utils.url_utils.TestUrlUtils method) test_download_url_non_existent() (megadetector.utils.url_utils.TestUrlUtils method) test_download_url_to_specified_file() (megadetector.utils.url_utils.TestUrlUtils method) test_download_url_to_temp_file() (megadetector.utils.url_utils.TestUrlUtils method) test_file_write() (in module megadetector.utils.path_utils) test_filename_cleaning() (megadetector.utils.path_utils.TestPathUtils method) test_fileparts() (megadetector.utils.path_utils.TestPathUtils method) test_find_image_strings() (megadetector.utils.path_utils.TestPathUtils method) test_find_images() (megadetector.utils.path_utils.TestPathUtils method) test_float_rounding_and_truncation() (in module megadetector.utils.ct_utils) test_folder_list() (megadetector.utils.path_utils.TestPathUtils method) test_folder_summary() (megadetector.utils.path_utils.TestPathUtils method) test_geometric_operations() (in module megadetector.utils.ct_utils) test_get_common_name_from_prediction_string() (megadetector.utils.wi_taxonomy_utils.TestWITaxonomyUtils method) test_get_file_sizes() (megadetector.utils.path_utils.TestPathUtils method) test_get_url_size_and_sizes() (megadetector.utils.url_utils.TestUrlUtils method) test_human_readable_to_bytes() (megadetector.utils.string_utils.TestStringUtils method) test_insert_before_extension() (megadetector.utils.path_utils.TestPathUtils method) test_is_executable() (megadetector.utils.path_utils.TestPathUtils method) test_is_float() (megadetector.utils.string_utils.TestStringUtils method) test_is_image_file() (megadetector.utils.path_utils.TestPathUtils method) test_list_operations() (in module megadetector.utils.ct_utils) test_mode (megadetector.utils.md_tests.MDTestOptions attribute) test_object_conversion_and_presentation() (in module megadetector.utils.ct_utils) test_package_imports() (in module megadetector.utils.md_tests) test_parallel_check_image_integrity() (megadetector.visualization.visualization_utils.TestVisualizationUtils method)

test_parallel_copy_files() (megadetector.utils.path_utils.TestPathUtils method) test_parallel_download_urls() (megadetector.utils.url_utils.TestUrlUtils method) test_parallel_get_image_sizes() (megadetector.visualization.visualization_utils.TestVisualizationUtils method) test_parallel_unzip_files() (megadetector.utils.path_utils.TestPathUtils method) test_parallel_zip_individual_files_and_folders() (megadetector.utils.path_utils.TestPathUtils method) test_path_is_abs() (megadetector.utils.path_utils.TestPathUtils method) test_path_join() (megadetector.utils.path_utils.TestPathUtils method) test_path_operations() (in module megadetector.utils.ct_utils) test_path_utils() (in module megadetector.utils.path_utils) test_recursive_file_list_and_file_list() (megadetector.utils.path_utils.TestPathUtils method) test_remove_ansi_codes() (megadetector.utils.string_utils.TestStringUtils method) test_remove_empty_folders() (megadetector.utils.path_utils.TestPathUtils method) test_resize_coco_dataset_main() (in module megadetector.data_management.resize_coco_dataset) test_resize_image_folder() (megadetector.visualization.visualization_utils.TestVisualizationUtils method) test_resize_images() (megadetector.visualization.visualization_utils.TestVisualizationUtils method) test_resize_sequential_vs_parallel() (megadetector.data_management.resize_coco_dataset.TestResizeCocoDataset method) test_safe_create_link_unix() (megadetector.utils.path_utils.TestPathUtils method) test_split_path() (megadetector.utils.path_utils.TestPathUtils method) test_string_parsing() (in module megadetector.utils.ct_utils) test_string_utils() (in module megadetector.utils.string_utils) test_suite_entry_point() (in module megadetector.utils.md_tests) test_temp_folder_creation() (in module megadetector.utils.ct_utils) test_test_url_and_test_urls() (megadetector.utils.url_utils.TestUrlUtils method) test_type_checking_and_validation() (in module megadetector.utils.ct_utils) test_url() (in module megadetector.utils.url_utils) test_urls() (in module megadetector.utils.url_utils) test_visualization_utils() (in module megadetector.visualization.visualization_utils) test_wi_taxonomy_utils() (in module megadetector.utils.wi_taxonomy_utils) test_write_json() (in module megadetector.utils.ct_utils) test_write_read_list_to_file() (megadetector.utils.path_utils.TestPathUtils method) test_zip_file_and_unzip_file() (megadetector.utils.path_utils.TestPathUtils method) test_zip_files_into_single_zipfile() (megadetector.utils.path_utils.TestPathUtils method) test_zip_folder() (megadetector.utils.path_utils.TestPathUtils method) TestPathUtils (class in megadetector.utils.path_utils) TestResizeCocoDataset (class in megadetector.data_management.resize_coco_dataset) TestStringUtils (class in megadetector.utils.string_utils) TestUrlUtils (class in megadetector.utils.url_utils) TestVisualizationUtils (class in megadetector.visualization.visualization_utils) TestWITaxonomyUtils (class in megadetector.utils.wi_taxonomy_utils) tf_test() (in module megadetector.utils.gpu_test) TFDetector (class in megadetector.detection.tf_detector) threshold (megadetector.postprocessing.separate_detections_into_folders.SeparateDetectionsIntoFoldersOptions attribute) threshold_coco_dataset() (in module megadetector.data_management.threshold_coco_dataset) time_sample (megadetector.detection.process_video.ProcessVideoOptions attribute) (megadetector.detection.run_md_and_speciesnet.RunMDSpeciesNetOptions attribute) to_api_detection() (megadetector.postprocessing.repeat_detection_elimination.repeat_detections_core.DetectionLocation method) to_bool() (in module megadetector.utils.ct_utils) top_folders_to_bottom() (in module megadetector.postprocessing.top_folders_to_bottom) TopFoldersToBottomOptions (class in megadetector.postprocessing.top_folders_to_bottom) torch_test() (in module megadetector.utils.gpu_test) treat_copy_failures_as_warnings (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute) trim_to_detections (megadetector.visualization.visualize_video_output.VideoVisualizationOptions attribute) trim_to_images_with_bboxes (megadetector.visualization.visualize_db.DbVizOptions attribute) truncate_float() (in module megadetector.utils.ct_utils) truncate_float_array() (in module megadetector.utils.ct_utils) try_download_known_detector() (in module megadetector.detection.run_detector) try_get_datetime_from_image() (in module megadetector.data_management.ocr_tools)

U

unique_id_strategy (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute) unlabeled_classes (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute) unzip_file() (in module megadetector.utils.path_utils)

url_to_relative_path() (in module megadetector.utils.wi_platform_utils) use_model_native_classes (megadetector.detection.pytorch_detector.PTDetector attribute) use_symlinks (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute) use_threads (megadetector.data_management.read_exif.ReadExifOptions attribute)

V

validate_batch_results() (in module megadetector.postprocessing.validate_batch_results) validate_label_file() (in module megadetector.data_management.yolo_to_coco) validate_payload() (in module megadetector.utils.wi_platform_utils) validate_predictions_file() (in module megadetector.utils.wi_taxonomy_utils) validate_yolo_dataset() (in module megadetector.data_management.yolo_to_coco) ValidateBatchResultsOptions (class in megadetector.postprocessing.validate_batch_results) validateBoxes (megadetector.data_management.databases.integrity_check_json_db.IntegrityCheckOptions attribute) verbose (megadetector.data_management.cct_json_utils.SequenceOptions attribute) (megadetector.data_management.databases.integrity_check_json_db.IntegrityCheckOptions attribute) (megadetector.data_management.read_exif.ReadExifOptions attribute) (megadetector.detection.process_video.ProcessVideoOptions attribute) (megadetector.detection.run_md_and_speciesnet.RunMDSpeciesNetOptions attribute) (megadetector.detection.video_utils.FrameToVideoOptions attribute) (megadetector.postprocessing.compare_batch_results.BatchComparisonOptions attribute) (megadetector.postprocessing.detector_calibration.CalibrationOptions attribute) (megadetector.postprocessing.validate_batch_results.ValidateBatchResultsOptions attribute) (megadetector.utils.extract_frames_from_video.FrameExtractionOptions attribute) (megadetector.visualization.visualize_db.DbVizOptions attribute)

video_folder_to_frames() (in module megadetector.detection.video_utils) video_to_frames() (in module megadetector.detection.video_utils) VideoVisualizationOptions (class in megadetector.visualization.visualize_video_output) visualize_db() (in module megadetector.visualization.visualize_db) visualize_detector_output() (in module megadetector.visualization.visualize_detector_output) visualize_video_output() (in module megadetector.visualization.visualize_video_output) viz_size (megadetector.visualization.visualize_db.DbVizOptions attribute) viz_target_width (megadetector.postprocessing.postprocess_batch_results.PostProcessingOptions attribute)

W

warning_mode (megadetector.utils.md_tests.MDTestOptions attribute) wi_download_csv_to_coco() (in module megadetector.data_management.wi_download_csv_to_coco) wi_result_to_prediction_string() (in module megadetector.utils.wi_platform_utils) windows_path_to_wsl_path() (in module megadetector.utils.path_utils) worker_type (megadetector.detection.run_md_and_speciesnet.RunMDSpeciesNetOptions attribute) write_checkpoint() (in module megadetector.detection.run_detector_batch) write_download_commands() (in module megadetector.utils.wi_platform_utils)

write_html_image_list() (in module megadetector.utils.write_html_image_list) write_json() (in module megadetector.utils.ct_utils) write_list_to_file() (in module megadetector.utils.path_utils) write_object_with_serialized_datetimes() (in module megadetector.data_management.cct_json_utils) write_prefix_download_command() (in module megadetector.utils.wi_platform_utils) write_results_to_file() (in module megadetector.detection.run_detector_batch) write_yolo_dataset_file() (in module megadetector.data_management.coco_to_yolo) wsl_path_to_windows_path() (in module megadetector.utils.path_utils)

Y

yolo_category_id_to_name (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute) yolo_json_output_to_md_output() (in module megadetector.data_management.yolo_output_to_md_output) yolo_results_folder (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute) yolo_to_coco() (in module megadetector.data_management.yolo_to_coco)

yolo_txt_output_to_md_output() (in module megadetector.data_management.yolo_output_to_md_output) yolo_working_dir (megadetector.utils.md_tests.MDTestOptions attribute) yolo_working_folder (megadetector.detection.run_inference_with_yolov5_val.YoloInferenceOptions attribute) YoloInferenceOptions (class in megadetector.detection.run_inference_with_yolov5_val)

Z

zamba_results_to_md_results() (in module megadetector.data_management.zamba_to_md) zip_each_file_in_folder() (in module megadetector.utils.path_utils)

zip_file() (in module megadetector.utils.path_utils) zip_files_into_single_zipfile() (in module megadetector.utils.path_utils) zip_folder() (in module megadetector.utils.path_utils)